Package: mfdb 7.4-0

mfdb: MareFrame DB Querying Library

Creates and manages a PostgreSQL database suitable for storing fisheries data and aggregating ready for use within a Gadget <https://gadget-framework.github.io/gadget2/> model. See <https://mareframe.github.io/mfdb/> for more information.

Authors:Jamie Lentin [aut, cre, cph], Bjarki Thor Elvarsson [aut]

mfdb_7.4-0.tar.gz
mfdb_7.4-0.zip(r-4.7)mfdb_7.4-0.zip(r-4.6)mfdb_7.4-0.zip(r-4.5)
mfdb_7.4-0.tgz(r-4.6-any)mfdb_7.4-0.tgz(r-4.5-any)
mfdb_7.4-0.tar.gz(r-4.7-any)mfdb_7.4-0.tar.gz(r-4.6-any)
mfdb_7.4-0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mfdb/json (API)
NEWS

# Install 'mfdb' in R:
install.packages('mfdb', repos = c('https://lentinj.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.80 score 252 scripts 239 downloads 73 exports 6 dependencies

Last updated from:385d164e34. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK151
source / vignettesOK186
linux-release-x86_64OK147
macos-release-arm64OK128
macos-oldrel-arm64OK135
windows-develOK141
windows-releaseOK235
windows-oldrelOK105
wasm-releaseOK103

Exports:gadget_areafilegadget_dir_readgadget_dir_writegadget_directorygadget_filegadget_fleet_componentgadget_likelihood_componentgadget_stockfile_extremesgadget_stockfile_initialconditionsgadget_stockfile_recruitmentgadget_stockfile_refweightmfdbmfdb_area_sizemfdb_area_size_depthmfdb_bootstrap_groupmfdb_concatenate_resultsmfdb_cs_dumpmfdb_cs_restoremfdb_disconnectmfdb_dplyr_divisionmfdb_dplyr_predatormfdb_dplyr_preymfdb_dplyr_samplemfdb_dplyr_survey_indexmfdb_dplyr_tablemfdb_empty_taxonomymfdb_find_speciesmfdb_groupmfdb_group_numberedmfdb_import_areamfdb_import_bait_type_taxonomymfdb_import_cs_taxonomymfdb_import_divisionmfdb_import_gear_taxonomymfdb_import_net_type_taxonomymfdb_import_population_taxonomymfdb_import_port_taxonomymfdb_import_sampling_typemfdb_import_species_taxonomymfdb_import_stomachmfdb_import_surveymfdb_import_survey_indexmfdb_import_temperaturemfdb_import_tow_taxonomymfdb_import_trip_taxonomymfdb_import_vessel_owner_taxonomymfdb_import_vessel_taxonomymfdb_intervalmfdb_na_groupmfdb_rpath_paramsmfdb_sample_countmfdb_sample_meanlengthmfdb_sample_meanlength_stddevmfdb_sample_meanweightmfdb_sample_meanweight_stddevmfdb_sample_rawdatamfdb_sample_scaledmfdb_sample_totalweightmfdb_share_withmfdb_step_intervalmfdb_stomach_presenceratiomfdb_stomach_preycountmfdb_stomach_preymeanlengthmfdb_stomach_preymeanweightmfdb_stomach_preyweightratiomfdb_survey_index_meanmfdb_survey_index_totalmfdb_temperaturemfdb_timestep_biannuallymfdb_timestep_quarterlymfdb_timestep_yearlymfdb_unaggregatedread.gadget_file

Dependencies:DBIduckdbgetPassloggingrlangrstudioapi

Storing & grouping other weight measurements

Rendered fromweightmeasurements.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-01-24
Started: 2021-08-18

Import hydrographic data into MFDB

Rendered fromimport_hydrography_cmems.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-01-24
Started: 2021-08-18

Storing & grouping by arbitrary populations

Rendered frompopulation.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-01-24
Started: 2021-08-18

Storing & grouping by tow metadata

Rendered fromtow_data.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-01-24
Started: 2021-08-18

Storing & grouping by vessel trips

Rendered fromtrip.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-01-24
Started: 2021-08-18

Readme and manuals

Help Manual

Help pageTopics
MareFrame DB querying librarymfdb-package
MareFrame DB Rpath interfacemfdb_rpath_params
Gadget area filesgadget_areafile
Gadget directory objectsgadget_directory gadget_dir_read gadget_dir_write
Gadget file objectsas.character.gadget_file gadget_file print.gadget_file read.gadget_file
Gadget fleet filesgadget_fleet_component
Gadget likelihood componentsgadget_likelihood_component
Gadget stock filesgadget_stockfile_extremes gadget_stockfile_initialconditions gadget_stockfile_recruitment gadget_stockfile_refweight
MareFrame DB classmfdb mfdb_disconnect
MareFrame DB groupsmfdb_bootstrap_group mfdb_group mfdb_group_numbered mfdb_timestep_biannually mfdb_timestep_quarterly mfdb_timestep_yearly
MareFrame DB intervalsmfdb_interval
MareFrame DB aggregate NAsmfdb_na_group
MareFrame DB intervalsmfdb_step_interval
MareFrame DB unaggregated datamfdb_unaggregated
MareFrame DB Dump / Restoremfdb_cs_dump mfdb_cs_restore
MareFrame DB dplyr interfacemfdb_dplyr_division mfdb_dplyr_predator mfdb_dplyr_prey mfdb_dplyr_sample mfdb_dplyr_survey_index mfdb_dplyr_table
MareFrame tools & helpersmfdb_find_species
MareFrame Query Utilitiesmfdb_concatenate_results
MareFrame Data Import functionsmfdb_import_stomach mfdb_import_survey mfdb_import_survey_index mfdb_import_temperature
MareFrame Taxonomy import functionsmfdb_empty_taxonomy mfdb_import_area mfdb_import_bait_type_taxonomy mfdb_import_cs_taxonomy mfdb_import_division mfdb_import_gear_taxonomy mfdb_import_net_type_taxonomy mfdb_import_population_taxonomy mfdb_import_port_taxonomy mfdb_import_sampling_type mfdb_import_species_taxonomy mfdb_import_tow_taxonomy mfdb_import_trip_taxonomy mfdb_import_vessel_owner_taxonomy mfdb_import_vessel_taxonomy
MareFrame DB queriesmfdb_area_size mfdb_area_size_depth mfdb_sample_count mfdb_sample_meanlength mfdb_sample_meanlength_stddev mfdb_sample_meanweight mfdb_sample_meanweight_stddev mfdb_sample_rawdata mfdb_sample_scaled mfdb_sample_totalweight mfdb_stomach_presenceratio mfdb_stomach_preycount mfdb_stomach_preymeanlength mfdb_stomach_preymeanweight mfdb_stomach_preyweightratio mfdb_survey_index_mean mfdb_survey_index_total mfdb_temperature
MareFrame DB sharing optionsmfdb_share_with
MareFrame DB Datasetscase_study digestion_stage gear institute market_category maturity_stage mfdb-data sex species stomach_state vessel_type