Package: mfdb 7.3-1
mfdb: MareFrame DB Querying Library
Creates and manages a PostgreSQL database suitable for storing fisheries data and aggregating ready for use within a Gadget <https://gadget-framework.github.io/gadget2/> model. See <https://mareframe.github.io/mfdb/> for more information.
Authors:
mfdb_7.3-1.tar.gz
mfdb_7.3-1.zip(r-4.5)mfdb_7.3-1.zip(r-4.4)mfdb_7.3-1.zip(r-4.3)
mfdb_7.3-1.tgz(r-4.4-any)mfdb_7.3-1.tgz(r-4.3-any)
mfdb_7.3-1.tar.gz(r-4.5-noble)mfdb_7.3-1.tar.gz(r-4.4-noble)
mfdb_7.3-1.tgz(r-4.4-emscripten)mfdb_7.3-1.tgz(r-4.3-emscripten)
mfdb.pdf |mfdb.html✨
mfdb/json (API)
| # Install 'mfdb' in R: |
| install.packages('mfdb', repos = c('https://lentinj.r-universe.dev', 'https://cloud.r-project.org')) |
- case_study - MareFrame DB Datasets
- digestion_stage - MareFrame DB Datasets
- gear - MareFrame DB Datasets
- institute - MareFrame DB Datasets
- market_category - MareFrame DB Datasets
- maturity_stage - MareFrame DB Datasets
- sex - MareFrame DB Datasets
- species - MareFrame DB Datasets
- stomach_state - MareFrame DB Datasets
- vessel_type - MareFrame DB Datasets
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:cb876d8a0f. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | OK | Oct 27 2024 |
| R-4.5-linux | OK | Oct 27 2024 |
| R-4.4-win | OK | Oct 27 2024 |
| R-4.4-mac | OK | Oct 27 2024 |
| R-4.3-win | OK | Oct 27 2024 |
| R-4.3-mac | OK | Oct 27 2024 |
Exports:gadget_areafilegadget_dir_readgadget_dir_writegadget_directorygadget_filegadget_fleet_componentgadget_likelihood_componentgadget_stockfile_extremesgadget_stockfile_initialconditionsgadget_stockfile_recruitmentgadget_stockfile_refweightmfdbmfdb_area_sizemfdb_area_size_depthmfdb_bootstrap_groupmfdb_concatenate_resultsmfdb_cs_dumpmfdb_cs_restoremfdb_disconnectmfdb_dplyr_divisionmfdb_dplyr_predatormfdb_dplyr_preymfdb_dplyr_samplemfdb_dplyr_survey_indexmfdb_dplyr_tablemfdb_empty_taxonomymfdb_find_speciesmfdb_groupmfdb_group_numberedmfdb_import_areamfdb_import_bait_type_taxonomymfdb_import_cs_taxonomymfdb_import_divisionmfdb_import_gear_taxonomymfdb_import_net_type_taxonomymfdb_import_population_taxonomymfdb_import_port_taxonomymfdb_import_sampling_typemfdb_import_species_taxonomymfdb_import_stomachmfdb_import_surveymfdb_import_survey_indexmfdb_import_temperaturemfdb_import_tow_taxonomymfdb_import_trip_taxonomymfdb_import_vessel_owner_taxonomymfdb_import_vessel_taxonomymfdb_intervalmfdb_na_groupmfdb_rpath_paramsmfdb_sample_countmfdb_sample_meanlengthmfdb_sample_meanlength_stddevmfdb_sample_meanweightmfdb_sample_meanweight_stddevmfdb_sample_rawdatamfdb_sample_scaledmfdb_sample_totalweightmfdb_share_withmfdb_step_intervalmfdb_stomach_presenceratiomfdb_stomach_preycountmfdb_stomach_preymeanlengthmfdb_stomach_preymeanweightmfdb_stomach_preyweightratiomfdb_survey_index_meanmfdb_survey_index_totalmfdb_temperaturemfdb_timestep_biannuallymfdb_timestep_quarterlymfdb_timestep_yearlymfdb_unaggregatedread.gadget_file
Dependencies:bitbit64blobcachemclicpp11DBIduckdbfastmapgenericsgetPassgluehmslifecyclelogginglubridatememoisepkgconfigplogrrlangRPostgresRSQLiterstudioapitimechangevctrswithr
Storing & grouping other weight measurements
Rendered fromweightmeasurements.Rmdusingknitr::rmarkdownon Oct 27 2024.Last update: 2021-08-18
Started: 2021-08-18
Import hydrographic data into MFDB
Rendered fromimport_hydrography_cmems.Rmdusingknitr::rmarkdownon Oct 27 2024.Last update: 2022-06-21
Started: 2021-08-18
Storing & grouping by arbitrary populations
Rendered frompopulation.Rmdusingknitr::rmarkdownon Oct 27 2024.Last update: 2021-08-18
Started: 2021-08-18
Storing & grouping by tow metadata
Rendered fromtow_data.Rmdusingknitr::rmarkdownon Oct 27 2024.Last update: 2022-06-07
Started: 2021-08-18
Storing & grouping by vessel trips
Rendered fromtrip.Rmdusingknitr::rmarkdownon Oct 27 2024.Last update: 2021-10-09
Started: 2021-08-18
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| MareFrame DB querying library | mfdb-package |
| MareFrame DB Rpath interface | mfdb_rpath_params |
| Gadget area files | gadget_areafile |
| Gadget directory objects | gadget_directory gadget_dir_read gadget_dir_write |
| Gadget file objects | as.character.gadget_file gadget_file print.gadget_file read.gadget_file |
| Gadget fleet files | gadget_fleet_component |
| Gadget likelihood components | gadget_likelihood_component |
| Gadget stock files | gadget_stockfile_extremes gadget_stockfile_initialconditions gadget_stockfile_recruitment gadget_stockfile_refweight |
| MareFrame DB class | mfdb mfdb_disconnect |
| MareFrame DB groups | mfdb_bootstrap_group mfdb_group mfdb_group_numbered mfdb_timestep_biannually mfdb_timestep_quarterly mfdb_timestep_yearly |
| MareFrame DB intervals | mfdb_interval |
| MareFrame DB aggregate NAs | mfdb_na_group |
| MareFrame DB intervals | mfdb_step_interval |
| MareFrame DB unaggregated data | mfdb_unaggregated |
| MareFrame DB Dump / Restore | mfdb_cs_dump mfdb_cs_restore |
| MareFrame DB dplyr interface | mfdb_dplyr_division mfdb_dplyr_predator mfdb_dplyr_prey mfdb_dplyr_sample mfdb_dplyr_survey_index mfdb_dplyr_table |
| MareFrame tools & helpers | mfdb_find_species |
| MareFrame Query Utilities | mfdb_concatenate_results |
| MareFrame Data Import functions | mfdb_import_stomach mfdb_import_survey mfdb_import_survey_index mfdb_import_temperature |
| MareFrame Taxonomy import functions | mfdb_empty_taxonomy mfdb_import_area mfdb_import_bait_type_taxonomy mfdb_import_cs_taxonomy mfdb_import_division mfdb_import_gear_taxonomy mfdb_import_net_type_taxonomy mfdb_import_population_taxonomy mfdb_import_port_taxonomy mfdb_import_sampling_type mfdb_import_species_taxonomy mfdb_import_tow_taxonomy mfdb_import_trip_taxonomy mfdb_import_vessel_owner_taxonomy mfdb_import_vessel_taxonomy |
| MareFrame DB queries | mfdb_area_size mfdb_area_size_depth mfdb_sample_count mfdb_sample_meanlength mfdb_sample_meanlength_stddev mfdb_sample_meanweight mfdb_sample_meanweight_stddev mfdb_sample_rawdata mfdb_sample_scaled mfdb_sample_totalweight mfdb_stomach_presenceratio mfdb_stomach_preycount mfdb_stomach_preymeanlength mfdb_stomach_preymeanweight mfdb_stomach_preyweightratio mfdb_survey_index_mean mfdb_survey_index_total mfdb_temperature |
| MareFrame DB sharing options | mfdb_share_with |
| MareFrame DB Datasets | case_study digestion_stage gear institute market_category maturity_stage mfdb-data sex species stomach_state vessel_type |
