R packages by lentinj

gadget3 - Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3

A framework to assist creation of marine ecosystem models, generating either 'R' or 'C++' code which can then be optimised using the 'TMB' package and standard 'R' tools. Principally designed to reproduce gadget2 models in 'TMB', but can be extended beyond gadget2's capabilities. Kasper Kristensen, Anders Nielsen, Casper W. Berg, Hans Skaug, Bradley M. Bell (2016) <doi:10.18637/jss.v070.i05> "TMB: Automatic Differentiation and Laplace Approximation.". Begley, J., & Howell, D. (2004) <https://core.ac.uk/download/pdf/225936648.pdf> "An overview of Gadget, the globally applicable area-disaggregated general ecosystem toolbox. ICES.".

Last updated 17 hours ago

8.69 score 8 stars 165 scripts 226 downloads

unittest - TAP-Compliant Unit Testing

Concise TAP <http://testanything.org/> compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.

Last updated 3 months ago

7.59 score 4 stars 216 scripts 566 downloads

mfdb - MareFrame DB Querying Library

Creates and manages a PostgreSQL database suitable for storing fisheries data and aggregating ready for use within a Gadget <https://gadget-framework.github.io/gadget2/> model. See <https://mareframe.github.io/mfdb/> for more information.

Last updated 2 years ago

4.74 score 221 scripts 194 downloads